| Protein ZmOrphan280 | |
|---|---|
|
ZmOrphan280 is a protein in the Orphans family.
|
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| Information | |
| Orphans Name: | ZmOrphan280 |
| Species: | Maize |
| Orphans Family: | Orphans |
| Gene Name(Synonym): | |
| Uniprot ID: | C0PKF4 |
Protein ZmOrphan280
ZmOrphan280 is a protein in the Orphans family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00072 | |
| Zm00001eb405030_T002 |  |
| Zm00001eb405030_T001 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d023242 | DAPseq |  |
sequence | fimo | position |
| Zm00001d023242 | DAPseq |  |
sequence | fimo | position |
| Zm00001d023242 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d023242 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmOrphan280 is the regulator
Interactions where ZmOrphan280 is the target
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Zm00001eb405030_T002 from maize genome v5
Amino Acid Sequence
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MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESS
SLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINN
RKRKGAGTEEILPQLANRSRHS
MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESS
SLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINN
RKRKGAGTEEILPQLANRSRHS
MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESS
SLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINN
RKRKGAGTEEILPQLANRSRHS
MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESS
SLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINN
RKRKGAGTEEILPQLANRSRHS
MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESS
SLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINN
RKRKGAGTEEILPQLANRSRHS
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00072 |
|
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Nucleotide Sequence
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CAGAAAACCACCCCCAAGAACTAAA...
CAGAAAACCACCCCCAAGAACTAAAAAACTAACCGAGCCATATCATATGATATGATATGATGTGATATGGTAGTAGCACTAGCAGCAGTATGAAAAAGGCAGAGGGAACAAAAGAAAATGGTGGTGGATCCTTTCGGGCCCCTGCTCTAGAATACTAGCGCAACTGATATGGGGTCAATTCGTGGCAAGATTTGGAGCAAATCTGCTCCAGGATCTTGCTTTCCATGCGCTGGGACTTTCTTTTAGTCACCGCACCTTTTTCCCCTTCGCTTTGCTTTCCACGATTCCACACATCATATCTCCTCGAATCGTTTCATGTGCTTACTGCTTATATATATATATGTGTGTGTGTCTGTCGACTCAAGCACACACACACACATCCTCCACCACCATTCATCAGAAAGCGAAGCACCAGCCTCTGATGCCAAGCCAAAGCACACACACCTCCTCCAGCCTTTCTTCCTCTACAACCCCAATTCTTCCCTGCAGCTCTGCTGCTGCCTTGTTTCGATCGGTCATGGCGGCGGTGGCCACAGAGACTCCGTTCCATGTCCTGGCGGTGGACGACAGCCTCCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAGGAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCAGACATGAACAAGCTCAAGCCCCACATACTGAAAAGCAGATGCAACCAGGAACAGCACCAGCAAAGTGACAGTCACAGTGGCGAACGCAGGAACCCCACAATCAGCAGCAGCGATAGCATAAACAACCGCAAGAGAAAGGGTGCAGGCACCGAAGAAATCTTGCCCCAGCTGGCAAACAGATCAAGGCACAGTTAACTGAGAACTGACTAGTACAGCTAAAACCTTTTCTTTTTCACTTTACTTTGGCTTACTGATTTGTAACGTAGATGTTAGCCCTGGATTTGCAAAACGGAACGGAATCTGTAAACTGATACTGCTTGAGTCGAATCGATCGAAGTGATTCTGCACCAGATCTCCCTATTTCATTTATCAGAATCGAAAGCCAGCTGACAGAGTCACAGTAACAGCCCGTTGGACATAGCAGCAGGTGCCGAAGCCAAGAACATCTGAAACTGACCGTCGGATAACCTACGATGGGAGTAGCCTTTTACTGCTTCTAAGCTTTAGCCTGGATACAAGTTGTCACTACAGTAGTCAGTAGGGCAGTAACTTGGTGCATCTCCAAGAGTTTTCAAAACACACTGTCAATCTAGAAATTTTTGGTGATGTAGCTTCTCCCACAAGTGGCCTCTTGCAAATTCTTCAGTGATGTGGTTTCTACCACTTGTGCTCTTGGATTCTCAGTTCCTTGACTCTACAGTATTTTTGTCTCTACGTGCT
GRMZM2G129954_T01 from maize genome v3
Amino Acid Sequence
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MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESS
SLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINN
RKRKGAGTEEILPQLANRSRHS
Nucleotide Sequence
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CATATCTCCTCGAATCGTTTCATGT...
CATATCTCCTCGAATCGTTTCATGTGCTTACTGCTTATATATATATATGTGTGTGTGTCTGTCGACTCAAGCACACACACACACATCCTCCACCACCATTCATCAGAAAGCGAAGCACCAGCCTCTGATGCCAAGCCAAAGCACACACACCTCCTCCAGCCTTTCTTCCTCTACAACCCCAATTCTTCCCTGCAGCTCTGCTGCTGCCTTGTTTCGATCGGTCATGGCGGCGGTGGCCACAGAGACTCCGTTCCATGTCCTGGCGGTGGACGACAGCCTCCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAGGAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCAGACATGAACAAGCTCAAGCCCCACATACTGAAAAGCAGATGCAACCAGGAACAGCACCAGCAAAGTGACAGTCACAGTGGCGAACGCAGGAACCCCACAATCAGCAGCAGCGATAGCATAAACAACCGCAAGAGAAAGGGTGCAGGCACCGAAGAAATCTTGCCCCAGCTGGCAAACAGATCAAGGCACAGTTAACTGAGAACTGACTAGTACAGCTAAAACCTTTTCTTTTTCACTTTACTTTGGCTTACTGATTTGTAACGTAGATGTTAGCCCTGGATTTGCAAAACGGAACGGAATCTGTAAACTGATACTGCTTGAGTCGAATCGATCGAAGTGATTCTGCACCAGATCTCCCTATTTCATTTATCAGAATCGAAAGCCAGCTGACAGAGTCACAGTAACAGCCCGTTGGACATAGCAGCAGGTGCCGAAGCCAAGAACATCTGAAACTGACCGTCGGATAACCTACGATGGGAGTAGCCTTTTACTGCTTCTAAGCTTTAGCCTGGATACAAGTTGTCACTACAGTAGTCAGTAGGGCAGTAACTTGGTGCATCTCCAAGAGTTTTCAAAACACACTGTCAATCTAGAAATTTTTGGTGATGTAGCTTCTCCCACAAGTGGCCTCTTGCAAATTCTTCAGTGATGTGGTTTCTACCACTTGTGCTCTTGGATTCTCAGTTCCTTGACTCTACAGTATTTTTGTCTCTACGTGCTACTTAATGGTGTTCCAGGTAGTTGGATTAACTACTGCAAGGGCCTTCCGCAGGATAACCCCCTTTCTCCCTACATATTCATCATCGTCTTCGGCCCCGTTTTACCCTCTAGATCATATAATCCAGCTTAAATAAATTAAAAGACAAACAAACA
GRMZM2G129954_T02 from maize genome v3
Amino Acid Sequence
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MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLVRRRWLPLPSSYELVGQPCCALLVLSSPSVTS
Nucleotide Sequence
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CATATCTCCTCGAATCGTTTCATGT...
CATATCTCCTCGAATCGTTTCATGTGCTTACTGCTTATATATATATATGTGTGTGTGTCTGTCGACTCAAGCACACACACACACATCCTCCACCACCATTCATCAGAAAGCGAAGCACCAGCCTCTGATGCCAAGCCAAAGCACACACACCTCCTCCAGCCTTTCTTCCTCTACAACCCCAATTCTTCCCTGCAGCTCTGCTGCTGCCTTGTTTCGATCGGTCATGGCGGCGGTGGCCACAGAGACTCCGTTCCATGTCCTGGCGGTGGACGACAGCCTCCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGGTAAGAAGAAGATGGCTTCCTCTTCCTAGCTCCTACGAGTTGGTTGGTCAACCGTGTTGTGCACTGCTTGTATTGTCTTCTCCTAGCGTCACTAGCTAGTCCTCAAGAAGAGGTTTCTGGTGTAATCAGGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAGGTGACTACTGAACTACTCCGGCATGATCACTGAACATTCTGTATAGTGCTTGCTTTCTGGCATGATCACTGAAGATAACAAGGCCTAAAGATGCATGTTTGGTTTGGTTTGCTCTACCAGGAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGGTGAGCAGTCAGCTAGCACTCTACTATTTGTCTTGTGGATCTAAACAACAGTTTTTAAGGGAAACAAATCTTAAGTTAAAAATTGGGGAAAAATTACACTAGTGAGGTGAGGACTTGAGTAGAGTTCAGGCAAGAAAACAACTTTATCATTTATAAGGATTTTTTTAGCAGCCGGCCTGTTCTTGCTCAGAAAATCACATCATGTTCACAAAACCATTAGACAGCCACTATAAAGTTCCTTTTTTCTCTCTCTCTTCCATGCATGCGGACATAAATAAATGAATAAGTTTTGTACCAAAAGATTGGATATGGAAATCTCTCCGAATCCTTAATGATCTGCTGTCACATGTGTTGTATAATAGTAGATGACAGCAACCCTTGTATTATATCTCGGCCTGGTCGGTGTAAAATAAATCAAAAACAAATAAAAGAAGATATGAAATGATACGCAGTTCGATCTTGCGGATCTTTTCATATCGCCGTACGTATCCATGGAACAGGTCTGTTGATGCAGACAGGTCACTAGCACCACTGACAAATTGTTGCGTTGCGCGATACACCAGTGGCAGGGCGCTAAAGTCAAAGAAAGAATCAAACGATATTATTGCTGTTCTTTCGAAC
Zm00001d023242_T001 from maize genome v4
Amino Acid Sequence
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MYAVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLESSSLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKL
KPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINNRKRKGAGTEEILPQLANRSRHS
Nucleotide Sequence
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CGGCCCCTTTGGCTTTTGTTTCTGA...
CGGCCCCTTTGGCTTTTGTTTCTGAATGTATGCAGTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGGAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCAGACATGAACAAGCTCAAGCCCCACATACTGAAAAGCAGATGCAACCAGGAACAGCACCAGCAAAGTGACAGTCACAGTGGCGAACGCAGGAACCCCACAATCAGCAGCAGCGATAGCATAAACAACCGCAAGAGAAAGGGTGCAGGCACCGAAGAAATCTTGCCCCAGCTGGCAAACAGATCAAGGCACAGTTAACTGAGAACTGACTAGTACAGCTAAAACCTTTTCTTTTTCACTTTACTTTGGCTTACTGATTTGTAACGTAGATGTTAGCCCTGGATTTGCAAAACGGAACGGAATCTGTAAACTGATACTGCTTGAGTCGAATCGATCGAAGTGATTCTGCACCAGATCTCCCTATTTCATTTATCAGAATCGAAAGCCAGCTGACAGAGTCACAGTAACAGCCCGTTGGACATAGCAGCAGGTGCCGAAGCCAAGAACATCTGAAACTGACCGTCGGATAACCTACGATGGGAGTAGCCTTTTACTGCTTCTAAGCTTTAGCCTGGATACAAGTTGTCACTACAGTAGTCAGTAGGGCAGTAACTTGGTGCATCTCCAAGAGTTTTCAAAACACACTGTCAATCTAGAAATTTTTGGTGATGTAGCTTCTCCCACAAGTGGCCTCTTGCAAATTCTTCAGTGATGTGGTTTCTACCACTTGTGCTCTTGGATTCTCAGTTCCTTGACTCTACAGTATTTTTGTCTCTACGTGCTACTTAATG
Zm00001eb405030_T001 from maize genome v5
Amino Acid Sequence
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MCVCLSTQAHTHTSSTTIHQKAKHQPLMPSQSTHTSSSLSSSTTPILPCSSAAALFRSVMAAVATETPFHVLAVDDSLPD
RKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIP
VVIMSSENIPSRINRCLEEGADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHSGERRNPTISSSDSINNRKRKGA
GTEEILPQLANRSRHS
Nucleotide Sequence
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CAACGATCCGTATCTCTGAGACTTT...
CAACGATCCGTATCTCTGAGACTTTGAGCAGGCCGGGTCAGCACGATCACACGGCAATCTACTCCTCCCCTACTTGCTAGAGGACAGAAAACCACCCCCAAGAACTAAAAAACTAACCGAGCCATATCATATGATATGATATGATGTGATATGGTAGTAGCACTAGCAGCAGTATGAAAAAGGCAGAGGGAACAAAAGAAAATGGTGGTGGATCCTTTCGGGCCCCTGCTCTAGAATACTAGCGCAACTGATATGGGGTCAATTCGTGGCAAGATTTGGAGCAAATCTGCTCCAGGATCTTGCTTTCCATGCGCTGGGACTTTCTTTTAGTCACCGCACCTTTTTCCCCTTCGCTTTGCTTTCCACGATTCCACACATCATATCTCCTCGAATCGTTTCATGTGCTTACTGCTTATATATATATATGTGTGTGTGTCTGTCGACTCAAGCACACACACACACATCCTCCACCACCATTCATCAGAAAGCGAAGCACCAGCCTCTGATGCCAAGCCAAAGCACACACACCTCCTCCAGCCTTTCTTCCTCTACAACCCCAATTCTTCCCTGCAGCTCTGCTGCTGCCTTGTTTCGATCGGTCATGGCGGCGGTGGCCACAGAGACTCCGTTCCATGTCCTGGCGGTGGACGACAGCCTCCCGGACAGGAAGCTCATCGAGAGGCTCCTCAAGACCTCTTCCTTCCAAGTGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAGGAGTCGTCGTCTCTCAGAGATATCCCGGTGGTGATCATGTCCTCTGAGAACATTCCTTCAAGGATCAATAGGTGCCTGGAGGAAGGAGCTGACGAGTTCTTCCTAAAACCTGTGCGGCTATCAGACATGAACAAGCTCAAGCCCCACATACTGAAAAGCAGATGCAACCAGGAACAGCACCAGCAAAGTGACAGTCACAGTGGCGAACGCAGGAACCCCACAATCAGCAGCAGCGATAGCATAAACAACCGCAAGAGAAAGGGTGCAGGCACCGAAGAAATCTTGCCCCAGCTGGCAAACAGATCAAGGCACAGTTAACTGAGAACTGACTAGTACAGCTAAAACCTTTTCTTTTTCACTTTACTTTGGCTTACTGATTTGTAACGTAGATGTTAGCCCTGGATTTGCAAAACGGAACGGAATCTGTAAACTGATACTGCTTGAGTCGAATCGATCGAAGTGATTCTGCACCAGATCTCCCTATTTCATTTATCAGAATCGAAAGCCAGCTGACAGAGTCACAGTAACAGCCCGTTGGACATAGCAGCAGGTGCCGAAGCCAAGAACATCTGAAACTGACCGTCGGATAACCTACGATGGGAGTAGCCTTTTACTGCTTCTAAGCTTTAGCCTGGATACAAGTTGTCACTACAGTAGTCAGTAGGGCAGTAACTTGGTGCATCTCCAAGAGTTTTCAAAACACACTGTCAATCTAGAAATTTTTGGTGATGTAGCTTCTCCCACAAGTGGCCTCTTGCAAATTCTTCAGTGATGTGGTTTCTACCACTTGTGCTCTTGGATTCTCAGTTCCTTGACTCTACAGTATTTTTGTCTCTACGTGCT
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